<<O>>  Difference Topic ScientificWriting (r1.15 - 31 Jan 2006 - ArthurVanDam)

META TOPICPARENT Research

Scientific Writing

Line: 104 to 104

Use BibTex

Also read 'Cite it Right!'.

Other citation formats

Changed:
<
<
I use bibutils by Chris Putnam to convert e.g. RIS to BibTeX. See my own install instructions on how to get things going.
>
>
I use bibutils by Chris Putnam to convert e.g. RIS to BibTeX. See my own install instructions on how to get things going.

How I search my bib files

I use BibTool by Gerd Neugebauer, which can parse, search, pretty-print BibTeX files, and probably more. See my own install instructions on how to get things going. I created a tiny wrapper script around the BibTool executable for searching. This is bibsearch:

 <<O>>  Difference Topic ScientificWriting (r1.14 - 08 Dec 2005 - ArthurVanDam)

META TOPICPARENT Research

Scientific Writing

Line: 59 to 59

Adding classes/packages fonts to your existing TeX installation is not difficult. Either create a directory where all packages go into and add this dir to variable TEXINPUTS.
Changed:
<
<
The more clean approach is described in the CTAN docs.
>
>
The more clean approach is described for example here.

LateX picture to eps converter

Converting a LaTeX figure file (for example created by XFig) into an eps, with proper LaTeX fonts:
 <<O>>  Difference Topic ScientificWriting (r1.13 - 18 Jul 2005 - ArthurVanDam)

META TOPICPARENT Research

Scientific Writing

Line: 85 to 85

(Script by Yuri Kuznetsov.)

Added:
>
>

Ignore LaTeX temporaries in subversion (svn)

Most of my LaTeX work is stored in my subversion repository (install notes). latex produces quite some additional files (.log, .toc, and many more), which turn up marked with ? in the result from svn status. That is unnecessary information to me, it clutters up the other ? marks of files that I want to recognize as new/unversioned. I set the svn:ignore property on the containing directory using a file with patterns:
svn propset svn:ignore -F ~/tex/texignore .
The pattern file ~/tex/texignore contains these lines:
*.aux
*.log
*.nav
*.toc
*.snm
*.blg
*.bbl

Use BibTex

Also read 'Cite it Right!'.
 <<O>>  Difference Topic ScientificWriting (r1.12 - 04 May 2005 - ArthurVanDam)

META TOPICPARENT Research

Scientific Writing

Line: 91 to 91

Other citation formats

I use bibutils by Chris Putnam to convert e.g. RIS to BibTeX. See my own install instructions on how to get things going.

How I search my bib files

Changed:
<
<
I use BibTool by Gerd Neugebauer, which can parse, search, pretty-print BibTeX files, and probably more. I created a tiny wrapper script around it for searching. This is bibsearch:
>
>
I use BibTool by Gerd Neugebauer, which can parse, search, pretty-print BibTeX files, and probably more. See my own install instructions on how to get things going. I created a tiny wrapper script around the BibTool executable for searching. This is bibsearch:

#!/bin/bash
bibtool -- "select{$*}" -i ~/mybibdir/*.bib
 <<O>>  Difference Topic ScientificWriting (r1.11 - 02 May 2005 - ArthurVanDam)

META TOPICPARENT Research

Scientific Writing

Line: 12 to 12

beamer2handout converter

Producing handouts of your PDF files (e.g. talk slides) is easily done with PDFjam/pdfnup from David Firth. It takes quite some options though, and I made a small script that converts a pdf to an either 4- or 6upped pdf in the usual way. It is used like this:

Changed:
<
<
beamer2handout myslides.pdf beamer2handout myslides.pdf 6up beamer2handout myslides.pdf 4up otheroutputfile.pdf
>
>
$ beamer2handout myslides.pdf $ beamer2handout myslides.pdf 6up $ beamer2handout myslides.pdf 4up otheroutputfile.pdf

If you would like to use it get beamer2handout here. The setup is as follows:

Line: 90 to 90

Also read 'Cite it Right!'.

Other citation formats

I use bibutils by Chris Putnam to convert e.g. RIS to BibTeX. See my own install instructions on how to get things going.
Added:
>
>

How I search my bib files

I use BibTool by Gerd Neugebauer, which can parse, search, pretty-print BibTeX files, and probably more. I created a tiny wrapper script around it for searching. This is bibsearch:
#!/bin/bash
bibtool -- "select{$*}" -i ~/mybibdir/*.bib

Now, I can issue command like (I use single quotes in the terminal to avoid the need for escaping)

$ bibsearch 'author "Brio"'
$ bibsearch 'title "MHD"'
(double quotes in search string are necessary)

Often used abbreviations

  • e.g. (Latin) exempli gratia, for example.
 <<O>>  Difference Topic ScientificWriting (r1.10 - 29 Apr 2005 - ArthurVanDam)

META TOPICPARENT Research

Scientific Writing

Line: 22 to 22

  1. Make it executable: chmod u+x beamer2handout
  2. Edit beamer2handout, specify your location of pdfnup
Added:
>
>
Known problems: I used to run TeXLive 6, but some parts of it were too old for PDFJam, so I switched to TeXLive 8. (MI-colleagues: just edit your ~/.login where it says source /usr/local/startup/texlive6).
More specifically, I now have it working with pdfpages v0.3a and pdftex.def v0.03k

Block (un)commenting in NEdit

Open your NEdit settings file file (i.e. in ~/.nedit/nedit.rc for versions >= 5.4, or ~/.nedit for older versions)
 <<O>>  Difference Topic ScientificWriting (r1.9 - 27 Apr 2005 - ArthurVanDam)

META TOPICPARENT Research

Scientific Writing

Line: 9 to 9

Theme uubeamer

A latex-beamer theme in Utrecht University colors, including the sol logo. Read more on my uubeamer page.
Added:
>
>

beamer2handout converter

Producing handouts of your PDF files (e.g. talk slides) is easily done with PDFjam/pdfnup from David Firth. It takes quite some options though, and I made a small script that converts a pdf to an either 4- or 6upped pdf in the usual way. It is used like this:
beamer2handout myslides.pdf
beamer2handout myslides.pdf 6up
beamer2handout myslides.pdf 4up otheroutputfile.pdf

If you would like to use it get beamer2handout here. The setup is as follows:

  1. Save it in some convenient location
  2. Make it executable: chmod u+x beamer2handout
  3. Edit beamer2handout, specify your location of pdfnup

Block (un)commenting in NEdit

Open your NEdit settings file file (i.e. in ~/.nedit/nedit.rc for versions >= 5.4, or ~/.nedit for older versions)
 <<O>>  Difference Topic ScientificWriting (r1.8 - 12 Apr 2005 - ArthurVanDam)

META TOPICPARENT Research

Scientific Writing

Added:
>
>
TOC: No TOC in "Arthur.ScientificWriting"

Use LaTeX

Of course...

Useful packages/commands/scripts

Theme uubeamer

A latex-beamer theme in Utrecht University colors, including the sol logo. Read more on my uubeamer page.
Added:
>
>

Block (un)commenting in NEdit

Open your NEdit settings file file (i.e. in ~/.nedit/nedit.rc for versions >= 5.4, or ~/.nedit for older versions)

First, find in this file:

nedit.macroCommands: \

Next, look up the first Comments> line, and just above that, add:

        Comments>% Comment@LaTeX:::R: {\n\
                replace_in_selection("^.*$", "%&", "regex")\n\
        }\n\
        Comments>% Uncomment@LaTeX:::R: {\n\
                replace_in_selection("(^[ \\\\t]*%)(.*)$", "\\\\2", "regex")\n\
        }\n\

Or, including shortcut keys ([Shift]+[Ctrl]+C for commenting, [Shift]+[Ctrl]+[Alt]+C for uncommenting):

        Comments>% Comment@LaTeX:Shift+Ctrl+C:c:R: {\n\
                replace_in_selection("^.*$", "%&", "regex")\n\
        }\n\
        Comments>% Uncomment@LaTeX:Shift+Ctrl+Alt+C:u:R: {\n\
                replace_in_selection("(^[ \\\\t]*%)(.*)$", "\\\\2", "regex")\n\
        }\n\
Save the settings file and (re-)start NEdit.

Adding custom classes by hand

Adding classes/packages fonts to your existing TeX installation is not difficult. Either create a directory where all packages go into and add this dir to variable TEXINPUTS.
 <<O>>  Difference Topic ScientificWriting (r1.7 - 18 Mar 2005 - ArthurVanDam)

META TOPICPARENT Research

Scientific Writing

Use LaTeX

Line: 39 to 39

Use BibTex

Added:
>
>
Also read 'Cite it Right!'.

Other citation formats

I use bibutils by Chris Putnam to convert e.g. RIS to BibTeX. See my own install instructions on how to get things going.
 <<O>>  Difference Topic ScientificWriting (r1.6 - 31 Jan 2005 - ArthurVanDam)

META TOPICPARENT Research

Scientific Writing

Use LaTeX

Of course...
Changed:
<
<

Useful commands/scripts

>
>

Useful packages/commands/scripts

Theme uubeamer

A latex-beamer theme in Utrecht University colors, including the sol logo. Read more on my uubeamer page.

Adding custom classes by hand

Adding classes/packages fonts to your existing TeX installation is not difficult. Either create a directory where all packages go into and add this dir to variable TEXINPUTS.
 <<O>>  Difference Topic ScientificWriting (r1.5 - 28 Jan 2005 - ArthurVanDam)

META TOPICPARENT Research

Scientific Writing

Use LaTeX

Of course...

Useful commands/scripts

Added:
>
>

Adding custom classes by hand

Adding classes/packages fonts to your existing TeX installation is not difficult. Either create a directory where all packages go into and add this dir to variable TEXINPUTS.

The more clean approach is described in the CTAN docs.


LateX picture to eps converter

Changed:
<
<
Converting a LaTeX figure file (for example created by XFig) into an eps, with proper LaTeX fonts:
>
>
Converting a LaTeX figure file (for example created by XFig) into an eps, with proper LaTeX fonts:

#!/bin/bash -f
#!set -x
 <<O>>  Difference Topic ScientificWriting (r1.4 - 21 Jan 2005 - ArthurVanDam)

META TOPICPARENT Research

Scientific Writing

Use LaTeX

Of course...
Added:
>
>

Useful commands/scripts

LateX picture to eps converter

Converting a LaTeX figure file (for example created by XFig) into an eps, with proper LaTeX fonts:
#!/bin/bash -f
#!set -x
HEADER="\
\\documentclass{article} \n\
\\usepackage{epsfig,color,amsfonts,amssymb} \n\
\\\nonstopmode \n\
\\\begin{document} \n\
\\\titlepage \n\
\input{$1} \n\
\\\end{document} \n\
\004 \n\
"
echo -e $HEADER > TEMPFILE.tex
latex TEMPFILE.tex > /dev/null
dvips -E -q  -o $2 TEMPFILE.dvi
rm -f TEMPFILE TEMPFILE.tex TEMPFILE.dvi TEMPFILE.aux TEMPFILE.log
Save the above in a file texfig2eps, run chmod u+x texfig2eps, and use it as texfig2eps inputfile outputepsfile.

(Script by Yuri Kuznetsov.)


Use BibTex

Other citation formats

 <<O>>  Difference Topic ScientificWriting (r1.3 - 15 Dec 2004 - ArthurVanDam)

META TOPICPARENT Research

Scientific Writing

Use LaTeX

Of course...

Use BibTex

Changed:
<
<
Of course...
>
>

Other citation formats

I use bibutils by Chris Putnam to convert e.g. RIS to BibTeX. See my own install instructions on how to get things going.

Often used abbreviations

  • e.g. (Latin) exempli gratia, for example.
 <<O>>  Difference Topic ScientificWriting (r1.2 - 06 Dec 2004 - ArthurVanDam)

META TOPICPARENT Research

Scientific Writing

Use LaTeX

Line: 14 to 14

  • cf. (Latin) confer, compare.
  • qed. (Latin) quod erat demonstrandum, which was to be demonstrated.
Added:
>
>

Other expressions

  • A priori (Latin) before (the fact), from the former. A priori knowledge is knowledge gained or justified by reason alone, without the direct or indirect influence of experience (here, experience usually means observation of the world through sense perception.) (WP)
  • A posteriori (Latin) after (the fact). A posteriori knowledge is any other sort of knowledge; that is, knowledge the attainment or justification of which requires reference to experience.
  • A fortiori (Latin). For a still stronger, more certain reason; "if you are wrong then, a fortiori, so am I"
 <<O>>  Difference Topic ScientificWriting (r1.1 - 28 Oct 2004 - ArthurVanDam)
Line: 1 to 1
Added:
>
>
META TOPICPARENT Research

Scientific Writing

Use LaTeX

Of course...

Use BibTex

Of course...

Often used abbreviations

  • e.g. (Latin) exempli gratia, for example.
  • i.e. (Latin) id est, that is; that is to say; in other words
  • viz. (Latin) videlicet, contraction of videre licet, "it is permitted to see", That is; namely. Used to introduce examples, lists, or items.
  • cf. (Latin) confer, compare.
  • qed. (Latin) quod erat demonstrandum, which was to be demonstrated.
Revision r1.1 - 28 Oct 2004 - 14:10 - ArthurVanDam
Revision r1.15 - 31 Jan 2006 - 21:55 - ArthurVanDam